Daily Archives: January 29, 2018
There’s an error message when opening some Gaussian16 output files in GaussView5 for which the message displayed is the following:
ConnectionGLOG::Parse_Gauss_Coord(). Failure reading oriented atomic coordinates. Line Number
We have shared some solutions to the GaussView handling of *chk and *.fchk files in teh past but never for *.log files, and this time Dr. Davor Šakić from the University of Zagreb in Croatia has brought to my attention a fix for this error. If “Dipole orientation” with subsequent orientation is removed, the file becomes again readable by GaussView5.
Here you can download a script to fix the file without any hassle. The usage from the command line is simply:
˜$ chmod 777 Fg16TOgv5 ˜$ ./Fg16TOgv5 name.log
The first line is to change and grant all permissions to the script (use at your discretion/own risk), which in turn will take the output file name.log and yield two more files: gv5_name.log and and name.arch; the latter archive allows for easy generation of SI files while the former is formatted for GaussView5.x.
Thanks to Dr. Šakić for his script and insight, we hope you find it useful and if indeed you do please credit him whenever its due, also, if you find this or other posts in the blog useful, please let us know by sharing, staring and commenting in all of them, your feedback is incredibly helpful in justifying to my bosses the time I spent curating this blog.
Thanks for reading.