Category Archives: Chemistry
To chem or not -quite- too chem, that is the ChemNobel question:
Whether ’tis Nobeler in the mind to suffer
The curly arrows of organic fortune
Or to take rays against a sea of crystals
And by diffracting end them.
Me (With sincere apologies to WS)
Every year, in late September -like most chemists- I try to guess who will become the next Nobel Laureate in Chemistry. Also, every year, in early October -like most chemists- I participate in the awkward and pointless discussion of whether the prize was actually awarded to chemistry or not. Indeed, the Nobel prize for chemistry commonly stirs a conversation of whether the accomplishments being recognized lie within the realm of chemistry or biology whenever biochemistry shows its head, however shyly; but the task of dividing chemistry into sub-disciplines raises an even deeper question about the current validity of dividing science into broad branches in the first place and then further into narrower sub-disciplines.
I made a very lazy histogram of all the 178 Laureates since 1904 to 2017 based on subjective and personal categories (figure 1), and the creation of those categories was in itself an exercise in science contemplation. My criteria for some of the tough ones was the following: For instance, if it dealt with phenomena of atomic or sub-molecular properties (Rutherford 1908, Hahn 1944, Zewail 1999) then I placed it in the Chemical Physics category but if it dealt with an ensemble of molecules (Arrhenius 1903, Langmuir 1932, Molina 1995) then Physical Chemistry was chosen. Some achievements were about generating an analysis technique which then became essential to the development of chemistry or any of its branches but not for a chemical process per se, those I placed into the Analytical Chemistry box, like last year’s 2017 prize for electron cryo-microscopy (Dubochet, Frank, Henerson) or like 1923 prize to Fritz Pregl for “the invention of the method of microanalysis of organic substances” for which the then head of the Swedish Academy of Sciences, O. Hammarsten, pointed out that the prize was awarded not for a discovery but for modifying existing methods (which sounds a lot like a chemistry disclaimer to me). One of the things I learnt from this exercise is that subdividing chemistry became harder as the time moved forward which is a natural consequence of a more complex multi- and interdisciplinary environment that impacts more than one field. Take for instance the 2014 (Super Resolved Fluorescence Microscopy) and 2017 (Cryo-Electron Microscopy) prizes; out of the six laureates, only William Moerner has a chemistry related background a fact that was probably spotted by Milhouse Van Houten (vide infra).
Some of the ones that gave me the harder time: 1980, Gilbert and Sanger are doing structural chemistry by means of developing analytical techniques but their work on sequencing is highly influential in biochemistry that they went to the latter box; The same problem arose with Klug (1982) and the Mullis-Smith duo (1993). In 1987, the Nobel citation for Supramolecular Chemistry (Lehn-Cram-Pedersen) reads “for their development and use of molecules with structure-specific interactions of high selectivity.”, but I asked myself, are these non-covalent-bond-forming reactions still considered chemical reactions? I want to say yes, so placed the Lehn-Cram-Pedersen trio in the Synthesis category. For the 1975 prize I was split so I split the prizes and thus Prelog (stereochemistry of molecules) went into the Synthesis category (although I was thinking in terms of organic chemistry synthesis) and Cornforth (stereochemical control of enzymatic reactions) went into biochem. So, long story short, chemistry’s impact in biology has always had a preponderant position for the selection of the Nobel Prize in Chemistry, although if we fuse the Synthesis and Inorganic Chemistry columns we get a fairly even number of synthesis v biochemistry prizes.
Hard as it may be to fit a Laureate into a category, trying to predict the winners and even bet on it adds a lot of fun to the science being recognized. Hey! even The Simpsons did it with a pretty good record as shown below. Just last week, there was a very interesting and amusing ACS Webinar where the panelist shared their insights on the nomination and selection process inside the Swedish Academy; some of their picks were: Christopher Walsh (antibiotics); Karl Deisseroth (optogenetics); Horwich and Hartl (chaperon proteins); Robert Bergman (C-H activation); and John Goodenough (Li-ion batteries). Arguably, the first three of those five could fit the biochem profile. From those picks the feel-good prize and my personal favorite is John Goodenough not only because Li-ion batteries have shaped the modern world but because Prof. Goodenough is 96 years old and still very actively working in his lab at UT-Austin (Texas, US) #WeAreAllGoodEnough. Another personal favorite of mine is Omar Yaghi not only for the development of Metal-Organic-Frameworks (MOFs) but for a personal interaction we had twenty years ago that maybe one day I’ll recount here but for now I’ll just state the obvious: MOFs have shown a great potential for applications in various fields of chemistry and engineering but perhaps they should first become highly commercial for Yaghi to get the Nobel Prize.
Some curiosities and useless trivia: Fred Sanger is the only person to have been awarded the Nobel Prize in Chemistry twice. Marie Curie is the only person to have been awarded two Nobel Prizes in different scientific categories (Physics and Chemistry) and Linus Pauling was awarded two distinct Nobel Prizes (Chemistry and Peace). Hence, three out of the four persons ever to have been awarded two Nobel Prizes did it at least once in chemistry – the fourth is John Bardeen two times recipient of the Nobel Prize in Physics.
Of course the first thing I’ll do next Wednesday right after waking up is checking who got the Nobel Prize in Chemistry 2018 and most likely the second thing will be going to my Twitter feed and react to it, hopefully the third will be to blog about it.
The announcement is only two days away, who is your favorite?
Literature in synthetic chemistry is full of reactions that do occur but very little or no attention is payed to those that do not proceed. The question here is what can we learn from reactions that are not taking place even when our chemical intuition tells us they’re feasible? Is there valuable knowledge that can be acquired by studying the ‘anti-driving force’ that inhibits a reaction? This is the focus of a new manuscript recently published by our research group in Tetrahedron (DOI: 10.1016/j.tet.2016.05.058) which was the basis of Guillermo Caballero’s BSc thesis.
It is well known in organic chemistry that if a molecular structure has the possibility to be aromatic it can somehow undergo an aromatization process to achieve this more stable state. During some experimental efforts Guillermo Caballero found two compounds that could be easily regarded as non-aromatic tautomers of a substituted pyridine but which were not transformed into the aromatic compound by any means explored; whether by treatment with strong bases, or through thermal or photochemical reaction conditions.
These results led us to investigate the causes that inhibits these aromatization reactions to occur and here is where computational chemistry took over. As a first approach we proposed two plausible reaction mechanisms for the aromatization process and evaluated them with DFT transition state calculations at the M05-2x/6-31+G(d,p)//B3LYP/6-31+G(d,p) levels of theory. The results showed that despite the aromatic tautomers are indeed more stable than their corresponding non-aromatic ones, a high activation free energy is needed to reach the transition states. Thus, the barrier heights are the first reason why aromatization is being inhibited; there just isn’t enough thermal energy in the environment for the transformation to occur.
But this is only the proximal cause, we went then to search for the distal causes (i.e. the reasons behind the high energy of the barriers). The second part of the work was then the calculation of the delocalization energies and frontier molecular orbitals for the non-aromatic tautomers at the HF/cc-pVQZ level of theory to get insights for the large barrier heights. The energies showed a strong electron delocalization of the nitrogen’s lone pair to the oxygen atom in the carbonyl group. Such delocalization promoted the formation of an electron corridor formed with frontier and close-to-frontier molecular orbitals, resembling an extended push-pull effect. The hydrogen atoms that could promote the aromatization process are shown to be chemically inaccessible.
Further calculations for a series of analogous compounds showed that the dimethyl amino moiety plays a crucial role avoiding the aromatization process to occur. When this group was changed for a nitro group, theoretical calculations yielded a decrease in the barrier high, enough for the reaction to proceed. Electronically, the bonding electron corridor is interrupted due to a pull-pull effect that was assessed through the delocalization energies.
The identity of the compounds under study was assessed through 1H, 13C-NMR and 2D NMR experiments HMBC, HMQC so we had to dive head long into experimental techniques to back our calculations.
A couple of weeks ago I was invited to give a talk to a small university in southern Mexico called ‘Universidad de la Cañada‘ in the state of Oaxaca, one of the most underprivileged states in our nation. This institution is a rather small one but the work they are doing over there with as little resources as they have is truly remarkable . UNCA offers degrees in pharmacy, pharmacology, food sciences, clinical chemistry and other topics that aim to supply the needed human resources for the various industries that are settled in the region. There is a true feeling of togetherness at UNCA since they have little pieces of equipment yet they are all fully shared among researchers regardless of who received the finance to acquire them. Last year, two of their students came for a two months stay, after which, Alberto and Eduardo got their names on a publication of our research group. It was nice to see them again and even nicer to learn they are about to finish their studies and that they will come back again to our lab in late July.
Every year at UNCA there is a Pharmacology Day on which the students show the results to their research projects during a poster session and listen to lectures by guest speakers from various universities around Mexico. Most of their projects were aimed to the isolation of natural products from local resources and their usage in several kinds of consumer products. UNCA is in a very small town, village I might say, surrounded by mountains and vegetation; the view was spectacular as you may see from the pictures below. Thank you very much to my good friend Dr. Carmen Hernández-Galindo for inviting me to participate and share our work with their students, I hope we may go back again and keep a fruitful exchange between our groups.
During this talk, I took the opportunity to talk about the aforementioned paper in the context of molecular recognition and their in silico design but I think I should have talked more about the computational strategies that are most employed in the pharmaceutical industry. Never mind. I hope I get the opportunity to right this wrong. Still it was nice to give Alberto and Eduardo the opportunity to brag a little about being published authors.
Kudos to Rola Aburto, Dr. Margarita Bernabé, Dr. Rocío Rosas, and all the academic staff at UNCA for their invaluable dedication to teaching science against all odds, I can testify, through the hard work of their students, hat their effort is paying off.
On Friday May 30th, my good friend Dr. Josefina Aldeco, my wife and I, visited a children’s home in Querétaro (central Mexico) and brought them a few cool chemistry experiments for a short show. This event was promoted by a non-profit organization called “Anímate a estudiar” (Dare to study), namely by Mrs. Paulina Milanés who is always looking for ways to encourage kids from poor backgrounds to pursue their goals through study; among other things, they provide backpacks with school supplies to orphan kids like the girls we visited.
As a way to inspire them, we handed each girl a balloon drawn in the shape of a brain and asked them to inflate them daily by reading; by doing their homework; by asking questions all the time; by working hard in pursuit of a brighter future for which their brains are the most powerful muscles.
Many reactions took place that Friday; not only inside the flasks and beakers before our little audience but also in their faces and their engagement with us. Little by little these girls got out of their shells and became more excited, up to the point of performing their own chemical reaction themselves by polymerizing some glue with borax in hot water. This was for sure the first time they got in contact with chemistry but the true goal was to set up a spark in their minds that one day may turn into a life opportunity. We are aware that one small chemistry show can’t really have that effect, but if many more scientists reach out to these kids there is a bigger chance of creating a ripple effect that convince disenfranchised children that studying is the way to take the wheel of their own future.
Science is about development; its about spreading knowledge and the love for knowledge. Although we most times sit high on our ivory towers it is paramount to remember that there is also a social component to the scientific activity. Kids are eager to learn, but most school systems do their very best to limit their curiosity and ambition. We hope these girls find in studying a way to a better, happier and safer future. Mexico has a large economic disparity; climbing the social ladder is very hard and even more so for women which makes these girls a very vulnerable social group in the next generation.
It only takes one day. One day and some potassium iodide; some mentos on a diet-coke (sorry, Gina, for the squirt!); some cobalt chloride on paper; some balloons some glue and some borax in hot water. But above all it takes a big commitment.
I hope you readers, computational and experimental chemists alike, take some time out of your busy schedules and share your passion for science with kids, specially those with the lowest opportunities of getting in touch with real scientists. You can also contribute to this noble effort by making a small pay-pal donation to www.animateaestudiar.org or to any other similar organization in your local community.
It only takes one day.
P.S. Thanks to Josefina from Universidad Autónoma de Querétaro for providing material and reagents. Please go and check out her blogs (here and here) and encourage her to write more often! (Did I mention she published in Science a few years ago?)
A bit outside the scope of this blog (maybe), but just too cool to overlook. Augmented reality in chemistry education.
This is a guest post from Samantha Morra of EdTechTeacher.org, an advertiser on FreeTech4Teachers.com.
Augmented Reality (AR) blurs the line between the physical and digital world. Using cues or triggers, apps and websites can “augment” the physical experience with digital content such as audio, video and simulations. There are many benefits to using AR in education such as giving students opportunities to interact with items in ways that spark inquiry, experimentation, and creativity. There are a quite a few apps and sites working on AR and its application in education.
There are 6 physical paper cubes printed with different symbols from the periodic table. It takes a while to cut out and put together the cubes, but it…
View original post 475 more words
As every year this month we had the yearly Mexican Reunion on Theoretical Physical Chemistry organized by prominent researchers in the field, such as Dr. Emilio Orgaz (UNAM), Dr. Alberto Vela (CINVESTAV) and many other. Over 150 different works were presented during this edition which took place in Juriquilla, Querétaro at one of the many campuses of the National Autonomous University of Mexico scattered all around the country. Below you can see some pictures from the talks and the first poster session.
This time we contributed with a small poster on a mechanism proposed by Howard Diaz (an undergrad student from UAEM) on the equilibrium transformation of dihydrocinolines into 1-amino-indoles by an intramolecular rearrangement. May this post also serve as the starting point of a -mini-tutorial on how to evaluate a mechanism theoretically using QST3 and IRC in implicitly solvated environments (PCM)
The equilibrium under study and the proposed mechanism by which it occurs, originally proposed by Frontana-Uribe et al. looks a bit like this:
The energy profile, in which all transition states were calculated with the QST3 method, is presented below, calculated at various levels of theory. Also, the Internal Reaction Coordinate (IRC) connecting both states was calculated and is shown further below in the full poster.
From this results we believe that a new mechanistic proposal is needed since the energy barrier for the first step is quite high (~60 kcal/mol) and hence a bit unlikely to occur through that transition state. Nevertheless this is a first approach to elucidating a mechanism and the more knowledge about it the higher the control will be on this chemical transformation.
A full version of the poster is shown below for your convenience (Spanish). See you all at the next RMFQT in Morelia 2014!
What a happy coincidence -if indeed it was- that #RealTimeChem week happened to coincide with the sixtieth anniversary of the three seminal papers published in Nature on this day back in 1953, one of which was co-authored by J. Watson and F. Crick; of course I mean the publication for the first time of the structure of deoxyribose nucleic acid, or DNA, as we now call it.
You can get the original Nature papers from 1953 here at: http://www.nature.com/nature/dna50/archive.html (costs may apply)
Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid 737
J. D. WATSON & F. H. C. CRICK
Molecular Structure of Nucleic Acids: Molecular Structure of Deoxypentose Nucleic Acids 738
M. H. F. WILKINS, A. R. STOKES & H. R. WILSON
Molecular Configuration in Sodium Thymonucleate 740
ROSALIND E. FRANKLIN & R. G. GOSLING
Nature’s podcast released two episodes (called ‘pastcast’) to celebrate DNA’s structure’s birthday, one of them is an interview with Dr. Raymond Gosling who in 1953 worked under Dr. Rosalind Franklin at King’s College London in diffractometry of biological molecules. If you haven’t listened to them you can get them here at nature.com/nature/podcasts. Of course, the history around the discovery of DNA’s structure is not without controversy and it has been long argued that the work of Franklin and Gossling didn’t get all deserved credit from Watson and Crick. In their paper W&C acknowledge the contribution of the general nature of DNA from the unpublished results by Franklin’s laboratory but that is as far as they went, they didn’t even mention photo 51 which Crick saw at Wilkins laboratory, who in turn got it from Gossling at Franklin’s suggestion. Still, no one can deny that the helical structure with which we are now familiar is their work, and more importantly the discovery of the specific pairing, which according to Gossling was a stroke of genious that probably couldn’t have happened in his own group, but without Franklin’s diffraction and Gossling’s crystallization there was little they could do. Details about the process used to crystallize DNA can be heard in the aforementioned podcast, along with an inspiring tale of hard work by Dr. Gossling. Go now and listen to it, its truly inspiring.
For me it was not the story of a helix, that I was familiar with; it was the story of the specific pairing of two hélices
– Dr. Raymond Gosling
Above, the iconic Photo 51 taken by Franklin and Gossling (have you ever noticed how most scientists refer to Franklin just as Rosalind but no one refers to Watson as James? Gender bias has a role in this tale too) To a trained crystallographer, the helical symmetry is evident from the diffraction pattern but going from Photo 51 to the representation below was the subject of hard work too.
There are million of pages written during the last 60 years about DNA’s structure and its role in the chemistry of life; the nature of the pairing and the selectivity of base pairs through hydrogen bond interactions, an interaction found ubiquitously in nature; water itself is a liquid due to the intermolecular hydrogen-bonds, which reminds us about the delicate balance of forces in biochemistry making life a delicate matter. But I digress. Millions of pages have been written and I’m no position of adding a meaningful sentence to them; however, it is a fascinating tale that has shaped the course of mankind, just think of the Human Genome Project and all the possibilities both positive and negative! DNA and its discovery tale will continue to amaze us and inspire us, just like in 2011 it inspired the Genetech company to set a Guiness World Record with the largest human DNA helix.
Happy birthday, DNA!
Welcome of the third installment of #RealTimeChem, the diary. As I did yesterday and the day before, I will summarize my day in chemistry throughout the Tweets sent over this event.
— Joaquin Barroso (@joaquinbarroso) April 24, 2013
(Haha, I found the button to include the feed!)
I finally finished editing that supporting information I’ve been Twitting about all week, now I’m back at the manuscript re-editing a bit. This is a problem I have that I’m sure is shared by most of you: I just can’t let go. If I’m writing a manuscript I’ll read it and change it over and over; if I’m working on a presentation, I will edit and reorder the slides almost ad infinitum if it were not for deadlines. Professor Cea-Olivares, of whom I’ve written before in this blog, used to say that projects are never finished but merely abandoned. In all fairness we are still not on the ‘not letting go’ phase, there are still some sections of the manuscript that need our attention; and when I say we, I mean me and my collaborator Dr. Rodrigo Galindo who is currently working at the University of Utah (BTW go check out his blog and persuade him to pick it up again!)
But in the middle of the day there was a conference at Instituto de Química, in Mexico City, that I wanted to listen to. Dr. Marcos Hernández is a good colleague of mine who deals with asymmetric organocatalysis. I like his work a lot and I hold him in high esteem so I asked for a video transmission of his talk to be sent over to CCIQS at Toluca. In the following two Twits you can get a glimpse of our video conferencing facilities.
— Joaquin Barroso (@joaquinbarroso) April 24, 2013
— Joaquin Barroso (@joaquinbarroso) April 24, 2013
— Joaquin Barroso (@joaquinbarroso) April 24, 2013
Not all is work during RealTimeChem week, although perhaps it should be. Still, safety first! that’s our motto! (follow the link in message)
— Joaquin Barroso (@joaquinbarroso) April 24, 2013
Today I took some time to have a few interactions with other participants of #RealTimeChem and got to follow very interesting people. Definitely, after this week I will become a more active Twitter user (ouch!). But the research must go on, and today Maru started working on rendering the electrostatic potential surfaces for a rather large set of calix- and thiacalix[n]arenes for our line of research on molecular recognition agents.
— Joaquin Barroso (@joaquinbarroso) April 24, 2013
— Joaquin Barroso (@joaquinbarroso) April 24, 2013
— Joaquin Barroso (@joaquinbarroso) April 25, 2013
This is pretty much it for today; I’m very tired and I still need to work in other things so I’m off for now but stay tuned for more tomorrow when this blog will celebrate the 60th anniversary of the publication of DNA’s structure in Nature.
This initiative has turned out to be a lot of fun for me! I think so far the thing that has captured my attention the most is to grasp the realization that science, chemistry in this case, is performed by humans in small, and sometimes not so confident, steps, a description far from the pristine one we daily read throughout the plethora of journals. A similar former initiative, which should have been brought back during this week, was the #OverlyHonestMethods one. It’d be a lot of fun to have both hastags together during an entire week. The other thing I knew, but that #RealTimeChem has helped me understand is the fact that a lot of resources for research are needed and getting said resources consumes a lot of our time as researchers: grant submissions; applications revisions; meetings; academic events and a long etcetera occupy our time and attention and this isn’t necessarily a good thing all the time.
So here it is; my second day reporting my #RealTimeChem
Supporting information for our paper feels endless now. I want to launch calculations & I still have a ton of emails to reply!
Supporting information for our most recent paper consists of more than 200 figures corresponding to a few conformations from several compounds; this has consumed a lot of my time but I’m finally done with it! Now, its only a matter of time for us to submit it -we are aiming high!- and hopefully this may happen during #RealTimeChem. That would be cool!
No reply, unfortunately. I need to run some calculations for a small collaboration and these compounds include either La or Pr; I need a, preferably relativistic or quasirelativistic) effective core potential (maybe I should write a post illustrating the difference between ECP’s and pseudopotentials) for these atoms that is also compatible with some relatively simple electron density functional. The Basis Set Exchange library has one by Cao but its not referenced so there is only so much I can do with it.
Watching all the wheels of chemistry turn (slowly) during
#RealTimeChem makes you realize why each paper represents years of hard work
Between reading a Tweet about a grant submission and another one about having a paper published there is a lot of time and hard work involved, not to mention frustration, a little procrastination and a lot of fun over the course of a few years. During those years some chromatography columns are performed, some flasks are smashed and spectra are recorded. And this all happens very, very slowly as opposed as how we read it in journals where people seem to have had an original idea, gone to their labs, set up a few experiments, recorded the results and written the paper, and all before dinner!
The hindrances and intricacies of chemistry now have an outlet: blog-syn.blogspot.com In this site, the little details about synthesis are gathered in a sort of #OverlyHonestMethods way, only not as embarrassing; only practical. In a way, blog-syn is what this blog of mine was supposed to be for the lab of Dr. Silaghi-Dumitrescu back in Romania when I first conceived it. Little by little, the wheels of science turn but with every turn they move mankind forward.
Sadly, Maru is about to leave us for a short period of time now that she has completed her thesis and is about to get her B. Sc. in Chemistry; she threatens to come back for a Masters degree, though. She has played a crucial role in the lab’s success so I thought of taking a picture of her while working on her workstation. @RealTimeChem, the official Twitter account of the event, favorited this photo.
Tuesdays I teach a class titled ‘Molecular Design and Reactivity‘ (terrible name, I know) and today’s topic was the Valence-Bond method which, I’m sure you all know, is only of historical relevance although some nice conceptions arise from it, like the fact that a wavefunction can be approximated as a linear combination of smaller wavefunctions each corresponding to a specific electron configuration. I mostly use Donald McQuarrie‘s book on Quantum Chemistry, in case you are wondering.
This is a long three hours class starting at 5pm, and the research center is far from the chemistry school, so I usually don’t go back to the office afterwards. So here I am, at Starbucks in downtown Toluca, but chemistry for today is far from over! I still need to review some applications from students who are seeking funds from the local council for science to attend a seminar on polymers this summer in Barcelona. I was also requested by the Journal of Inclusion Phenomena and Macrocyclic Chemistry to serve as a reviewer for a submitted paper. Both activities have deadlines in May but I want to get them done now so I can
brag include them in my #RealTimeChem productivity report.
A few hours later…
Just Finished reading two proposals, I’m going to accept them both! 2 kids going 2 intl polymer seminar
And so I did it! Two students from a private university in the state want to participate in a polymer seminar in Spain. I think they have impressive results; too bad I had to sign a disclosure agreement so I can’t write anything about their project. Good for them and good for COMECyT for sponsoring outstanding students in science and engineering!
These past two days I haven’t personally launched any calculations; I haven’t had time to read any journals nor to write any applications or papers, yet I’m certain that the wheels at our lab are slowly turning, hopefully forward.
The first day of the #RealTimeChem event has gone by and here I am blogging about it in order to participate in the ensuing #RealTimeChemCarnival which is the blogging section, so to speak, of the aforementioned event. So, without further ado, this was my #RealTimeChem day:
Disclaimer: I’m not much of a Twitter man myself so I apologize in advanced for any dumb or stupid usage of it. I’m also new to Instagram and Vine, which I only downloaded on account of this event. Sorry for not taking snippets from the Twitter feed but I’m on Windows7 starter here and I don’t have such tools; I’m also not going to download some tool right now, sorry for that but if you know a better way, please do share it! I will be posting all week long so it might come in handy.
Editing sup. info. new paper on electronic interactions in rotaxane-like molecules with bio applications. Hope #RealTimeChem brings me luck!
We are almost done with this paper on drug delivery systems based on the architecture of calix[n]arenes. We’ve found some pretty interesting results about which features suit better certain drugs both in gas and solution phases. Most of my day had to do with editing the supporting information. Below, the picture that acompanied the previous Tweet.
Later on, along came a student whom, to be perfectly honest, I completely forgot about -my bad- but he was there and he was willing so off we went to work. Of course, being his first time, we had to start from scratch from the very basics of Gaussian’s use (and implicitly, the basics of the command line use in Linux). I’m not sure he wants his name to be posted here so he will remain in anonimity until otherwise stated. The associated Tweet read as follows:
Training a new student in using Gaussian, Gaussview and Linux. Lot of work to be done but he looks eager to learn 🙂
Being so much into #RealTimeChem worked as a serious motivator; the more you published the more you wanted to keep going! So all day long I had my head filled with things that I wanted to do, but I made a strong case about twitting only those things that I actually did and nothing in the lines of ‘thinking of …’ or ‘wishing I could…’ that sort of thing. I usually take little notes on google calendars about my day’s work as a means to keep track of my productivity, or sometimes, sadly, my lack thereof. This time Twitter was a loud witness of my activities which, hopefully, may be considered productive.
I teach a class on electronic structure each Tuesday, so I started preparing my class for tomorrow as a kind of break from editing that supporting information; the Twit read:
All day editing sup. info. has rendered me cross-eyed! Time 4 a break. Will reply work (chem) related email 🙂
and so I did. I got to reply to a professor in the far away island of Mauritius! He just invited me to participate in a virtual conference on computational chemistry. What a shame! It’d been nice to fly half way accross the world and set foot in that land! If you don’t know where Mauritius is, find Madagascar in southern Africa and then take a right on the Indic Ocean. As per his request, here I promote his event with all of you and with #RealTimeChem:
Then more e-mail
@joaquinbarroso 3h #RealTimeChem just accepted invitation 2 virtual conf.; accepted new intern by mail; now reviewing 2 applications for conference stipends
I didn’t finish reviewing these kid’s work but I think they might get their plane tickets from the local council for science and technology.
As I wrote earlier, I’m not a Twitter man so I get easily overwelmed by all the information generated within. I wanted to go home but before I got to read some Tweets and I was astonished by the enormous ammount of messages in the lines of ‘submitted a grant, now when can I do the corresponding research?‘; ‘grading! what a torture!’ and some others that indicated people was doing administrative work when they really wanted to get their hands dirty in the lab. This was a surprise to me because I imagined that most Twitter users and therfore, #RealTimeChem participants would be young students who are the ones who actually are up to their necks in chemistry! of course I Tweeted about my little observation in two messages.
So interesting 2 notice
#RealTimeChem deals more with research administration than wth research! I thought it’d be the other way around!